Martin BE, Harris JD, Sun J, Koelle K, and Brooke CB. 2019

Cellular co-infection increases the speed and efficiency of influenza A virus production and shapes the interferon response to infection

bioRxiv. doi: 10.1101/752329

Farrell A, Brooke CB, Koelle K, and Ke R. 2019

Coinfection of semi-infectious particles can contribute substantially to influenza infection dynamics

bioRxiv. doi:10.1101/547349


Koelle K, Farrell A, Brooke CB, and Ke R. 2019

Within-host infectious disease models accommodating cellular coinfection, with an application to influenza

Viral Evolution. doi:10.1101/359067

Alnaji FG, Holmes JR, Rendon G, Vera JC, Fields CJ, Martin, BE, and Brooke CB. 2019

Sequencing framework for the sensitive detection and precise mapping of defective interfering particle-associated deletions across influenza A and B viruses

J. Virology. doi:10.1128/JVI.00354-19

Martin BE and Brooke CB. 2019

Flu shows the power of diversity

Cell. doi:10.1016/j.cell.2018.12.017

Gallagher ME, Brooke CB, Ke R, and Koelle K. 2018

Causes and consequences of spatial within-host viral spread

Viruses. doi:10.3390/v10110627


Sun J and Brooke CB. 2018

Influenza A virus superinfection potential is regulated by viral genomic heterogeneity

mBio. doi:10.1128/mBio.01761-18

Diefenbacher M, Sun J, and Brooke CB. 2018

The parts are greater than the whole: the role of semi-infectious particles in influenza A virus biology

Current Opinion in Virology. doi:10.1016/j.coviro.2018.07.002


Kosik I*, Ince WL*, Gentles LE*, Oler AJ, Kosikova M, Angel M, Magadan JG, Xie H, Yewdell JW^, and Brooke CB. 2018^.

Influenza A virus hemagglutinin glycosylation compensates for antibody escape fitness costs

PLOS Pathogens. doi:10.1371/journal.ppat.1006796. *,^ Authors contributed equally


Brooke CB. 2017.

Population Diversity and Collective Interactions during Influenza Virus Infection

J. Virology. doi:10.1128/JVI.01164-17


Brooke CB*, Ince WL*, Wei J, Bennink JR, and Yewdell JW. 2014. 

Influenza A virus nucleoprotein selectively decreases neuraminidase gene segment packaging while enhancing fitness and transmissibility.

PNAS. 111(47): 16854-16859. *Authors contributed equally


Brooke CB. 2014. 

Biological activities of ‘noninfectious’ influenza A particles.

Future Virology. 9(1):41-51. 


Brooke CB, Ince WL, Wrammert J, Ahmed R, Wilson PC, Bennink JR, and Yewdell JW. 2012. 

Most influenza A virions fail to express at least one essential viral protein.

J. Virology. 87(6): 3155-62.